Chromatin

Editor: Paul S. Knoepfler, Ph.D.

 

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About the Editor

Paul Knoepfler, Ph.D. is an Assistant Investigator and Member of the Institute for Pediatric Regenerative Medicine, a collaborative initiative of Shriners Hospitals for Children and The University of California Davis School of Medicine, where he is also an Assistant Professor of Cell Biology and Human Anatomy.

Go to the Knoepfler Lab Homepage.

Academic Background
Education/Training
B.A. English Literature Reed College          1989
Ph.D. Molecular Pathology UC San Diego        1998
Mark Kamps Lab

Post-Doctoral Fellowship                      1998-2006
Robert Eisenman Lab
Fred Hutchinson Cancer Center

Lucille P. Markey Graduate Fellowship         1993-1998
Jane Coffin Childs Fellowship                 1998-2001
LLS Special Fellowship                        2002-2005
Howard Temin Award, NCI                       2005-present


News about Dr. Knoepfler and his work
USA Today Story on Dr. Knoepfler

UC Davis Medicine Story on March of Dimes Award for Dr. Knoepfler

UC Davis Medicine Magazine Story
http://www.fhcrc.org/about/pubs/center_news/2005/jul7/br6.html
http://www.fhcrc.org/about/pubs/center_news/2003/feb6/sart2.html
Recent stem and chromatin related papers

Knoepfler PS and Bush KM. Software for the efficient management of mouse colonies. Dis Model Mech. 2010 Jan-Feb;3(1-2):9-10.


Chen D, Pacal M, Wenzel P, Knoepfler PS, Leone G, and Bremner R. E2F-dependent division and E2F-independent survival in the developing retina. 2009 462(7275):925-9.


Varlakhanova, NV, and Knoepfler PS. Acting locally and globally: Mycs ever-expanding roles on chromatin. Cancer Research 2009 69:7487-90.


Cotterman R and Knoepfler PS. N-Myc regulates expression of pluripotency genes in neuroblastoma including lif, klf2, klf4, and lin28b. PLoS One 2009  4(6): e5799.


Knoepfler PS. Deconstructing stem cell tumorigenicity: a roadmap to safe regenerative medicine. Stem Cells 2009. 27(5): 1050-1056.


Knoepfler PS. Journal Club. A cell biologist looks at the risk and promise of a new insight into stem cells and cancer. Nature 2009. 457(228):361.


Knoepfler PS. Why Myc? An unexpected ingredient in the stem cell cocktail. Cell Stem Cell. 2008. 2(1):18-21

Martins RA, Zindy F, Donovan S, Zhang J, Pounds S, Wey A,  Knoepfler PS, Eisenman RN, Roussel MF, and Dyer, MA. N-Myc coordinates retinal growth with eye size during mouse development. Genes and Development 2008. 22(2): 179-93.


Knoepfler PS. Stem cells on the brain. Arch Neurology 2008. 65(3): 311-315.


Cotterman R, Jin VX, Krig SR, Lemen JM, Wey A, Farnham PJ, and Knoepfler PS. N-Myc regulates a widespread euchromatic program in the human genome partially independent of its role as a classical transcription factor. Cancer Research 2008. 68(23): 9654-9662.


Laurenti E,  Varnum-Finney B, Wilson A, Ferrero I, Blanco-Bose WE, Ehninger A, Knoepfler PS, Cheng PF, MacDonald R, Eisenman RN, Bernstein ID, Trumpp A. Hematopoietic stem cell function and survival depend on c-Myc and N-Myc activity. Cell Stem Cell 2008. 3(6): 611-624.



Ota S, Zhou ZQ, Knoepfler PS, and Hurlin PJ. Activities of N-Myc in the developing limb link control of skeletal size with digit separation. Development 2007. 134(8):1583-92.

 

Knoepfler PS. Myc goes global: new tricks for an old oncogene. Cancer Res 2007. 67(11):5061-3.

 

Habib T, Tsang M, Moreno de Alboran I, Nicks A, Park H, Wilson L, Knoepfler PS, Andrews S, Rawlings D, Eisenman RN, and Iritani BM. Myc Stimulates Lymphocyte Differentiation and Amplifies Calcium Signaling. Journal of Cell Biology. 2007, 179(4):717-31.


Hatton BA, Knoepfler PS, Kenney AM, Rowitch DH, de Alboran IM, Olson JM, Eisenman RN.Cancer Res. 2006 Sep 1;66(17):8655-61. N-myc Is an Essential Downstream Effector of Shh Signaling during both Normal and Neoplastic Cerebellar Growth.

Zindy F, Knoepfler PS, Xie S, Sherr CJ, Eisenman RN, Roussel MF. Proc Natl Acad Sci U S A. 2006 Aug 1;103(31):11579-83. Epub 2006 Jul 24. N-Myc and the cyclin-dependent kinase inhibitors p18Ink4c and p27Kip1 coordinately regulate cerebellar development.

Knoepfler PS, Zhang XY, Cheng PF, Gafken PR, McMahon SB, Eisenman RN. EMBO J. 2006 Jun 21;25(12):2723-34. Epub 2006 May 25. Myc influences global chromatin structure.

Knoepfler PS, Kenney AM. Neural precursor cycling at Sonic speed: N-Myc pedals, GSK-3 brakes. Cell cycle. 2006, 5(1):47-52.

Orian A, Grewall SS, Knoepfler PS, Edgar BA, Parkhurst SM, and Eisenman RN. Genomic Binding and Transcriptional Regulation by the Drosophila Myc and Mnt Transcription Factors. Cold Spring Harb Symp Quant Biol. 2005;70:1-10.


Okubo, T, Knoepfler PS, Eisenman RN, and Hogan, BLM. Nmyc plays an essential role during lung development as a dosage sensitive regulator of progenitor cell proliferation and differentiation. Development. 2005, 132(6):1363-74.

Swanson KA*, Knoepfler PS*, Huang, K, Kang RS, Cowley SM, Eisenman RN and Ishwar Radhakrishnan. The HBP1 and Mad1 repressors Recruit Sin3 by Binding to the PAH2 Domain with Opposite Helical Orientations. Nat. Struc. and Mol. Bio. 2004, 11(8):738-46. (*co-first authors).

Berkes CA, Bergstrom DA, Penn HP, Seaver KJ, Knoepfler PS, and Tapscott SJ. Pbx and Meis mark genes for activation by MyoD indicating a role for homeodomain genes in establishing myogenic potential. Mol. Cell. 2004, 14(4):465-77.

Knoepfler PS, Cheng PF, and Eisenman RN. N-myc is essential during neurogenesis for the rapid expansion of progenitor cell populations and the inhibition of neuronal differentiation Genes & Dev 2002, 16(20): 2699-2712.

Wotton D, Knoepfler PS, Laherty CD, Eisenman RN, and Massague J. The Smad transcriptional corepressor TGIF recruits mSin3 and histone deacetylases. Cell Growth Differ. 2001, 12(9):457-63.

Knoepfler PS, and Eisenman, RN. Sin meets NuRD and other tails of repression. Cell. 1999, 99(5):447-50.