Chromatin

Editor: Paul S. Knoepfler, Ph.D.

 

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In the movie above, N-Myc levels correlate with active chromatin and larger nuclear size, while repressive chromatin increases in knockout nuclei with progressively less N-Myc. N-Myc floxed cerebellar granule neural progenitors.

Paul S. Knoepfler, Ph.D.

PLEASE SEE NEW KNOEPFLER LAB WEBSITE AT STEM.WS

See Dr. Knoepfler's UC Davis departmental home page

Dr. Knoepfler's CIRM video on stem cell tumorigenicity and regenerative medicine safety
Upcoming Chromatin Meetings

2009
Cancer Genetics and Epigenetics Ventura CA USA Jan 25-30 2009


Epigenetics, Development and Human Disease Keystone Symposium Breckenridge, CO USA Jan 5-10 2009

Epigenetic Basis of Neurodevelopmental Disorders Keystone CO, USA March 6-10 2009


Deregulation of Transcription in Cancer Killarney, Co. Kerry, Ireland June 21-26 2009

Hot recent chromatin papers

STEM CELL EPIGENETICS

An extended transcriptional network for pluripotency of embryonic stem cells (Orkin Lab) Cell 2008 132(6): 1049-61.



Global Transcription in pluripotent embryonic stem cells (Meshorer Lab) Cell Stem Cell 2008 2(5):437-47



TUMOR CELL EPIGENETICS

Module map of stem cell genes guides creation of epithelial cancer stem cells (Chang Lab) Cell Stem Cell 2008 2(4):333-44.



NUP98-NSD1 links H3K36 methylation to Hox-A gene activation and leukaemogenesis (Kamps Lab)





Frederic Chedin's "Epigenetics in the News"




Stem Cell Job
New JOB OPENING: iPS cells
Postdoctoral position, Knoepfler Lab
Institute for Pediatric Regenerative Medicine
UC Davis School of Medicine/Shriners Hospital for Children

This opening is for a fellow to study induced pluripotent stem cell (iPS) formation.
Candidates should have experience and publications in tumor and stem cell biology, biochemistry, and molecular biology. Send email with CV and at least 3 letters of reference.



What is chromatin? Walther Flemming referred to chromatin as the darkly staining (from Greek 'Khroma' for "color") nuclear material. Chromatin is DNA "packaged" with histones and other proteins. Inactive heterochromatic foci stain darkly by EM (left).

I am interested in the influence of chromatin and gene expression on stem and tumor cell biology. One important observation from our research, as one can see in the animated  model above, is that the loss of Myc appears to result in dramatic spreading of heterochromatic foci. The mechanisms underlying this global chromatin function of Myc remain to be defined, but our initial evidence would suggest a dual model in which Myc operates both directly through its own DNA binding and recruitment of histone modifying enzymes but also indirectly through regulating expression of the HAT GCN5.

- Paul Knoepfler


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